I had the same problem, but you can operate the LEDs by writing to the relevant GPIO addresses. Set direction then set to 0 to switch on the relevant colour LED.
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Alan Carter
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RE: Expansion Dock LEDs seem not to work. (O2+)
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RE: Wifi Connection problems
Have you tried setting up the wifi via the command line? I had trouble getting my Omega 2 to connect to my Apple Time Capsule using the GUI, but configuring via the CLI worked fine.
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ser2net on Omega 2?
Can I install ser2net on Omega 2? I can't find the package.